Role of AI in drug development: Current status, challenges, opportunities, and future promise
Artificial intelligence (AI) heralds a transformative shift in drug development, with speed, precision, and predictive power as its core features. Advances in systems-level biology platforms, coupled with substantial investments in generative AI-centric pharma integration, have fostered healthy optimism among stakeholders about identifying new cures through renewed approaches and improved productivity. However, navigating epistemological, ethical, patient safety, and ontological dimensions within research and development (R&D) presents challenges that AI must address to enhance its mainstream adoption and practical utility. Here, multidisciplinary experts discuss key applications of AI across the full continuum of drug development, examine the challenges encountered, and propose solution frameworks. Drug development remains fraught with unknown biology, patient heterogeneity, and perplexing therapeutic risks. Stringent regulatory and compliance guidelines further necessitate that conventional pharma processes, practices, and strategies remain paramount in R&D execution, while guiding the integration of AI in a “value-for-effort,” evidence-based, yet Promethean fashion.

- Hall DA. DCT Event Series: Fostering Innovation and Collaboration in Decentralized Clinical Trials. LinkedIn post. 2024. Available from: https://www.linkedin.com/posts/novative1_akthealth-pharmaleaders-dct-activity- 7211452184587071489-uvRR [Last accessed on 2025 Dec 28].
- Kirkpatrick Partners. The Kirkpatrick Model. 2024. Available from: https://www.kirkpatrickpartners.com/the- kirkpatrick-model/ [Last accessed on 2025 Dec 11].
- Vincent F, Nueda A, Lee J, et al. Phenotypic drug discovery: Recent successes, lessons learned and new directions. Nat Rev Drug Discov. 2022;21(12):899-914. doi: 10.1038/s41573-022-00472-w
- Moffat JG, Vincent F, Lee JA, et al. Opportunities and challenges in phenotypic drug discovery: An industry perspective. Nat Rev Drug Discov. 2017;16(8):531-543. doi: 10.1038/nrd.2017.111
- Wassermann AM, Camargo LM, Auld DS. Composition and applications of focus libraries to phenotypic assays. Front Pharmacol. 2014;5:164. doi: 10.3389/fphar.2014.00164
- Hughes JP, Rees S, Kalindjian SB, et al. Principles of early drug discovery. Br J Pharmacol. 2011;162(6):1239–1249. doi: 10.1111/j.1476-5381.2010.01127.x
- Zhu T, Cao S, Su PC, et al. Hit identification and optimization in virtual screening: Practical recommendations based on a critical literature analysis. J Med Chem. 2013;56(17):6560– 6572. doi: 10.1021/jm301916b
- Gao B, Qiang B, Tan H, et al. DrugCLIP: Contrastive protein- molecule representation learning for virtual screening. arXiv. Preprint online 2023. doi: 10.48550/arXiv.2310.06367
- Mbou Sob UA, Li Q, Arbesú M, et al. Generative Model for Small Molecules with Latent Space RL Fine-Tuning to Protein Targets. arXiv. Preprint online 2024. doi: 10.48550/arXiv.2407.13780
- Bian Y, Kwon JJ, Liu C, et al. Target-driven machine learning- enabled virtual screening (TAME-VS) platform for early- stage hit identification. Front Mol Biosci. 2023;10:1163536. doi: 10.3389/fmolb.2023.1163536
- Shen L, Feng H, Qiu Y, et al. SVSBI: Sequence-based virtual screening of biomolecular interactions. Commun Biol. 2023;6:536. doi: 10.1038/s42003-023-04866-3
- Ghayoor A, Kohan HG. Revolutionizing pharmacokinetics: The dawn of AI-powered analysis. J Pharm Pharm Sci. 2024;27:12671. doi: 10.3389/jpps.2024.12671
- Gangwal A, Lavecchia A. Unleashing the power of generative AI in drug discovery. Drug Discov Today. 2024;29(6):103992. doi: 10.1016/j.drudis.2024.103992
- Atz K, Cotos L, Isert C, et al. Prospective de novo drug design with deep interactome learning. Nat Commun. 2024;15(1):3408. doi: 10.1038/s41467-024-47613-w
- Tang X, Dai H, Knight E, et al. A survey of generative AI for de novo drug design: New frontiers in molecule and protein generation. Brief Bioinform. 2024;25(4):bbae338. doi: 10.1093/bib/bbae338
- Gangwal A, Ansari A, Ahmad I, et al. Generative artificial intelligence in drug discovery: Basic framework, recent advances, challenges, and opportunities. Front Pharmacol. 2024;15:1331062. doi: 10.3389/fphar.2024.1331062
- Zeng X, Wang F, Luo Y, et al. Deep generative moleculardesign reshapes drug discovery. Cell Rep Med. 2022;3(12):100794.doi: 10.1016/j.xcrm.2022.100794
- Ahmad M, Teli TA. De novo molecular generation augmentation for drug discovery using deep learning approaches: A comparative study of variational autoencoders. J Angiother. 2024;8(10):1–13. doi: 10.25163/angiotherapy.8109996
- Sousa T, Correia J, Pereira V, et al. Generative deep learning for targeted compound design. J Chem Inf Model. 2021;61(11):5343–5361. doi: 10.1021/acs.jcim.0c01496
- Samanta S, O’Hagan S, Swainston N, et al. VAE-Sim: A novel molecular similarity measure based on a variational autoencoder. Molecules. 2020;25(15):3446. doi: 10.3390/molecules25153446
- Macedo B, Ribeiro Vaz I, Taveira Gomes T. MedGAN: Optimized generative adversarial network with graph convolutional networks for novel molecule design. Sci Rep. 2024;14(1):1212. doi: 10.1038/s41598-023-50834-6
- Tripathi S, Augustin AI, Dunlop A, et al. Recent advances and application of generative adversarial networks in drug discovery, development, and targeting. Artif Intell Life Sci. 2022;2:100045. doi: 10.1016/j.ailsci.2022.100045
- Kao PY, Yang YC, Chiang WY, et al. Exploring the advantages of quantum generative adversarial networks in generative chemistry. J Chem Inf Model. 2023;63(11):3307–3318. doi: 10.1021/acs.jcim.3c00562
- Haddad R, Litsa EE, Liu Z, et al. Targeted molecular generation with latent reinforcement learning. Sci Rep. 2025;15(1):15202. doi: 10.1038/s41598-025-99785-0
- Xiong Y, Wang Y, Wang Y, et al. Improving drug discovery with a hybrid deep generative model using reinforcement learning trained on a Bayesian docking approximation. J Comput Aided Mol Des. 2023;37(11):507–517. doi: 10.1007/s10822-023-00523-3
- Wang Q, Wei Z, Hu X, et al. Molecular generation strategy and optimization based on A2C reinforcement learning in de novo drug design. Bioinformatics. 2023;39(11):btad693. doi: 10.1093/bioinformatics/btad693
- Bou A, Thomas M, Dittert S, et al. ACEGEN: Reinforcement learning of generative chemical agents for drug discovery. J Chem Inf Model. 2024;64(15):5900–5911. doi: 10.1021/acs.jcim.4c00895
- Gómez-Bombarelli R, Wei JN, Duvenaud D, et al. Automatic chemical design using a data-driven continuous representation of molecules. ACS Cent Sci. 2018;4(2):268– 276. doi: 10.1021/acscentsci.7b00572
- De Cao N, Kipf T. MolGAN: An implicit generative model for small molecular graphs. arXiv. Preprint online 2018. doi: 10.48550/arXiv.1805.11973
- Popova M, Isayev O, Tropsha A. Deep reinforcement learning for de novo drug design. Sci Adv. 2018;4(7):eaap7885. doi: 10.1126/sciadv.aap7885
- Xu M, Wang H, Hu Y, et al. GeoDiff: A geometric diffusion model for molecular conformation generation. arXiv. Preprint online 2022. doi: 10.48550/arXiv.2203.02923
- Xu M, Powers AS, Dror RO, et al. Geometric latent diffusion models for 3D molecule generation. arXiv. Preprint online 2023. doi: 10.48550/arXiv.2305.01140
- Honda S, Shi S, Ueda HR, et al. SMILES Transformer: Pre- trained molecular fingerprint for low data drug discovery. arXiv. Preprint online 2019. doi: 10.48550/arXiv.1911.04738
- Jiang J, Chen L, Ke L, et al. A review of transformer models in drug discovery and beyond. J Pharm Anal. 2025;15(6):101081. doi: 10.1016/j.jpha.2024.101081
- You J, Liu B, Ying R, et al. Graph convolutional policy network for goal-directed molecular graph generation. arXiv. Preprint online 2018. doi: 10.48550/arXiv.1806.02473
- Shi C, Xu M, Guo H, et al. GraphAF: A flow-based autoregressive model for molecular graph generation. arXiv. Preprint online 2020. doi: 10.48550/arXiv.2001.09382
- Satorras VG, Hoogeboom E, Welling M. E(n) equivariant graph neural networks. arXiv. Preprint online 2021. doi: 10.48550/arXiv.2102.09844
- Hoogeboom E, Satorras VG, Castañeda AG, et al. Equivariant diffusion for molecule generation in 3D. arXiv. Preprint online 2022. doi: 10.48550/arXiv.2203.17003
- Schneuing A, Harris C, Du Y, et al. Structure-based drug design with equivariant diffusion models. Nat Comput Sci. 2024;4(12):899–909. doi: 10.1038/s43588-024-00737-x
- Edwards C, Lai T, Ros K, et al. Translation between molecules and natural language. In: Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing (EMNLP); Association for Computational Linguistics; 2022:375–413. doi: 10.18653/v1/2022.emnlp-main.26
- Rost B, Wang AY, Schwaller P. ChemCrow: A chemistry LLM agent powered by tools. arXiv. Preprint online 2023. doi: 10.48550/arXiv.2304.05376
- Bran AM, Cox S, Schilter O, Baldassari C, White AD, Schwaller P. Augmenting large language models with chemistry tools. Nat Mach Intell. 2024;6:525–535. doi: 10.1038/s42256-024-00832-8
- Vogt M. Exploring chemical space—Generative models and their evaluation. Artif Intell Life Sci. 2023;3:100064. doi: 10.1016/j.ailsci.2023.100064
- Vogt M. Using deep neural networks to explore chemical space. Expert Opin Drug Discov. 2022;17(3):297–304. doi: 10.1080/17460441.2022.2019704
- Bilodeau C, Jin W, Jaakkola T, et al. Generative models for molecular discovery: Recent advances and challenges. Wiley Interdiscip Rev Comput Mol Sci. 2022;12(2):e1608. doi: 10.1002/wcms.1608
- Wang J, Mao J, Wang M, et al. Explore drug-like space with deep generative models. Methods. 2023;210:52–59. doi: 10.1016/j.ymeth.2023.01.004
- Anstine DM, Isayev O. Generative models as an emerging paradigm in the chemical sciences. J Am Chem Soc. 2023;145(16):8736–8750. doi: 10.1021/jacs.2c13467
- Gao W, Luo S, Coley CW. Generative artificial intelligence for navigating synthesizable chemical space. arXiv. Preprint online 2024. doi: 10.48550/arXiv.2410.03494
- Brown N, Fiscato M, Segler MH, et al. GuacaMol: Benchmarking models for de novo molecular design. J Chem Inf Model. 2019;59(3):1096–1108. doi: 10.1021/acs.jcim.8b00839
- Jocys Z, Grundy J, Farrahi K. DrugPose: Benchmarking 3D generative methods for early stage drug discovery. Digit Discov. 2024;3:1308–1318. doi: 10.1039/D4DD00076E
- Khater, T., Alkhatib, S.A., AlShehhi, A. et al. Generative artificial intelligence based models optimization towards molecule design enhancement. J Cheminform 2025;17:116. doi: 10.1186/s13321-025-01059-4
- Tunyasuvunakool K, Adler J, Wu Z, et al. Highly accurate protein structure prediction for the human proteome. Nature. 2021;596(7873):590–596. doi: 10.1038/s41586-021-03828-1
- Marcu ŞB, Tăbîrcă S, Tangney M. An overview of AlphaFold’s breakthrough. Front Artif Intell. 2022;5:875587. doi: 10.3389/frai.2022.875587
- Abramson J, Adler J, Dunger J, et al. Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature. 2024;630(8016):493–500. doi: 10.1038/s41586-024-07487-w
- Baek M, DiMaio F, Anishchenko I, et al. Accurate prediction of protein structures and interactions using a three-track neural network. Science. 2021;373(6557):871–876. doi: 10.1126/science.abj8754
- Baek M, McHugh R, Anishchenko I, et al. Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNA. Nat Methods. 2024;21(1):117–121. doi: 10.1038/s41592-023-02086-5
- Krishna R, Wang J, Ahern W, et al. Generalized biomolecular modeling and design with RoseTTAFold All-Atom. Science. 2024;384(6693):eadl2528. doi: 10.1126/science.adl2528
- Lisanza SL, Gershon JM, Tipps SWK, et al. Multistate and functional protein design using RoseTTAFold sequence space diffusion. Nat Biotechnol. 2025;43:1288–1298. doi: 10.1038/s41587-024-02395-w
- Profitt A. AbbVie’s R&D Convergence Hub. Bio-IT World. 2023. Available from: https://www.bio-itworld.com/ news/2023/08/24/abbvie-s-r-d-convergence-hub [Last accessed on 2025 Nov 03].
- Generative Biology: Designing Biologic Medicines with Greater Speed and Success. 2022. Available from: https:// www.amgen.com/stories/2022/06/generative-biology--designing-biologics-with-greater-speed-and-success [Last accessed on 2025 Nov 04].
- Meet the ARCH: A Time-Saving Tool for Researchers Focused on Finding Cures. 2023. Available from: https:// www.abbvie.com/who-we-are/our-stories/meet-the-arch-a-time-saving-tool-for-researchers-focused-on-finding-cures. html [Last accessed on 2025 Nov 04].
- Decoding the Microcosm of Life, Advancing Human Health for All. Westlake Omics. 2023. Available from: https://www. westlakeomics.com/en/ [Last accessed on 2025 Nov 15].
- Vamathevan J, Clark D, Czodrowski P, et al. Applications of machine learning in drug discovery and development. Nat Rev Drug Discov. 2019;18(6):463–477. doi: 10.1038/s41573-019-0024-5
- Krummich, M. TechBio Market Map: Navigating the Landscape of Next-Generation Biotech. B2venture. 2024. Available from: https://www.b2venture.vc/stories/techbio- market-map [Last accessed on 2025 Nov 04].
- Kolides A, Nawaz A, Rathor A, et al. Artificial intelligence foundation and pre-trained models: Fundamentals, applications, opportunities, and social impacts. Simul Model Pract Theory. 2023;126:102754. doi: 10.1016/j.simpat.2023.102754
- Cherkasov A, Muratov EN, Fourches D, et al. QSAR modeling: Where have you been? Where are you going to? J Med Chem. 2014;57(12):4977–5010. doi: 10.1021/jm4004285
- Lewis RA. A general method for exploiting QSAR models in lead optimization. J Med Chem. 2005;48(5):1638–1648. doi: 10.1021/jm049228d
- Swanson K, Walther P, Leitz J, et al. ADMET-AI: A machine learning ADMET platform for evaluation of large-scale chemical libraries. Bioinformatics. 2024;40:btae416. doi: 10.1093/bioinformatics/btae416
- Sohlenius-Sternbeck AK, Terelius Y. Evaluation of ADMET Predictor in early discovery drug metabolism and pharmacokinetics project work. Drug Metab Dispos. 2022;50(2):95–104. doi: 10.1124/dmd.121.000552
- Han H, Shaker B, Lee JH, et al. Employing automated machine learning (AutoML) methods to facilitate the in silico ADMET properties prediction. J Chem Inf Model. 2025;65(7):3215–3225. doi: 10.1021/acs.jcim.4c02122
- Kumar A, Kini SG, Rathi E. A recent appraisal of artificial intelligence and in silico ADMET prediction in the early stages of drug discovery. Mini Rev Med Chem. 2021;21(18):2788–2800. doi: 10.2174/1389557521666210401091147
- Schwaller P, Petraglia R, Zullo V, et al. Predicting retrosynthetic pathways using transformer-based models and a hyper-graph exploration strategy. Chem Sci. 2020;11:3316–3325. doi: 10.1039/C9SC05704H
- Wang Y, Pang C, Wang Y, et al. Retrosynthesis prediction with an interpretable deep-learning framework based on molecular assembly tasks. Nat Commun. 2023;14(1):6155. doi: 10.1038/s41467-023-41698-5
- Nakamura S, Yasuo N, Sekijima M. Molecular optimization using a conditional transformer for reaction-aware compound exploration with reinforcement learning. Commun Chem. 2025;8(1):40. doi: 10.1038/s42004-025-01437-x
- Bu Y, Gao R, Zhang B, et al. CoGT: Ensemble machine learning method and its application on JAK inhibitor discovery. ACS Omega. 2023;8(14):13232–13242. doi: 10.1021/acsomega.3c00160
- Bleicher LS, van Daelen T, Honeycutt JD, et al. Enhanced utility of AI/ML methods during lead optimization by inclusion of 3D ligand information. Front Drug Discov. 2022;2:1074797. doi: 10.3389/fddsv.2022.1074797
- Yonchev D, Bajorath J. Integrating computational lead optimization diagnostics with analog design and candidate selection. Future Sci OA. 2020;6(3):FSO451. doi: 10.2144/fsoa-2019-0131
- Tosh C, Tec M, White JB, et al. A Bayesian active learning platform for scalable combination drug screens. Nat Commun. 2025;16(1):156. doi: 10.1038/s41467-024-55287-7
- Mak K-K, Pichika MR. Artificial intelligence in drug development: Present status and future prospects. Drug Discov Today. 2019;24(3):773–780. doi: 10.1016/j.drudis.2018.11.014
- Kint S, Dolfsma W, Robinson D. Strategic partnerships for AI-driven drug discovery: The role of relational dynamics. Drug Discov Today. 2024;29(12):104242. doi: 10.1016/j.drudis.2024.104242
- S. Food and Drug Administration. Considerations for the use of artificial intelligence to support regulatory decision-making for drug and biological products: Draft guidance for industry and other interested parties. 2025. FDA-2024-D-4689. Available from: https://www.fda.gov/ regulatory-information/search-fda-guidance-documents/ considerations-use-artificial-intelligence-support- regulatory-decision-making-drug-and-biological [Last accessed on 2025 Nov 06].
- Kim J, Mikson C, Pollard V, et al. Key takeaways from FDA’s draft guidance on use of AI in drug and biological life cycle. DLA Piper. 2025. Available from: https://www.dlapiper. com/en-us/insights/publications/2025/01/fda-releases- draft-guidance-on-use-of-ai [Last accessed on 2025 Jan 29].
- Sakiyama Y. The use of machine learning and nonlinear statistical tools for ADME prediction. Expert Opin Drug Metab Toxicol. 2009;5(2):149–169. doi: 10.1517/17425250902753261
- Tiwari SK, Singh DK, Ladumor MK, et al. Study of degradation behaviour of montelukast sodium and its marketed formulation in oxidative and accelerated test conditions and prediction of physicochemical and ADMET properties of its degradation products using ADMET Predictor™. J Pharm Biomed Anal. 2018;158:106–118. doi: 10.1016/j.jpba.2018.05.040
- Siramshetty VB, Xu X, Shah P. Artificial intelligence in ADME property prediction. Methods Mol Biol. 2024;2714:307–327. doi: 10.1007/978-1-0716-3441-7_17
- Zhang J, McDonald MA, Koscher BA, et al. Application of machine learning and mechanistic modeling to predict intravenous pharmacokinetic profiles in humans. J Med Chem. 2025;68(11):7737–7750. doi: 10.1021/acs.jmedchem.5c00340
- S. Food and Drug Administration. SafetAI Initiative. 2025. Available from: https://www.fda.gov/about-fda/nctr- research-focus-areas/safetai-initiative [Last accessed on 2025 Nov 19].
- S. Food and Drug Administration. Roadmap to Reducing Animal Testing in Preclinical Safety Studies. Available from: https://www.fda.gov/media/186092/download [Last accessed on 2025 Nov 19].
- S. Food and Drug Administration. FDA announces plan to phase out animal testing requirement for monoclonal antibodies and other drugs. 2025. Available from: https:// www.fda.gov/news-events/press-announcements/fda- announces-plan-phase-out-animal-testing-requirement- monoclonal-antibodies-and-other-drugs [Last accessed on 2025 Nov 19].
- Li X, Sale M, Nieforth K, et al. pyDarwin: A machine learning–enhanced automated nonlinear mixed effect model selection toolbox. Clin Pharmacol Ther. 2024;115(4):758– 773. doi: 10.1002/cpt.3114
- Machine learning model selection with Darwin in Pirana. 2023. Available from: https://www.certara.com/ on-demand-webinar/machine-learning-model-selection- with-darwin-in-pirana/ [Last accessed on 2025 Nov 5].
- Rebai I, Duval V, Akil A, et al. mlcov: New machine learning based R package for covariate selection. In: Proceedings of the Population Approach Group Europe (PAGE) Meeting; June 2024; Verona, Italy (or virtual). Available from: https://www. page-meeting.org/Abstracts/mlcov-new-machine-learning- based-r-package-for-covariate-selection/ [Last accessed on 2025 Nov 05].
- Raheem E, Lu Z, Zheng F, et al. Machine learning in predicting longitudinal platelet counts: Applications in dose optimization. Blood. 2024;144:4985. doi: 10.1182/blood-2024-199117
- Kaddi C, Tao M, Bergeler S, et al. Quantitative systems pharmacology-based digital twins approach supplements clinical trial data for enzyme replacement therapies in Pompe disease. Clin Pharmacol Ther. 2025;117(2):579–588. doi: 10.1002/cpt.3498
- Joslyn LR, Huang W, Miles D, et al. Digital twins elucidate critical role of Tscm in clinical persistence of TCR- engineered cell therapy. NPJ Syst Biol Appl. 2024;10(1):11. doi: 10.1038/s41540-024-00335-7
- Susilo ME, Li CC, Gadkar K, et al. Systems-based digital twins to help characterize clinical dose-response and propose predictive biomarkers in a Phase I study of bispecific antibody, mosunetuzumab, in NHL. Clin Transl Sci. 2023;16(7):1134–1148. doi: 10.1111/cts.13501
- Alum, EU. AI-driven biomarker discovery: Enhancing precision in cancer diagnosis and prognosis. Discov Onc 2025;16:313. doi: 10.1007/s12672-025-02064-7
- Lotter W; Hassett MJ; Schultz N; Kehl KL; Van Allen EM; Cerami E. Artificial Intelligence in Oncology: Current Landscape, Challenges, and Future Directions. Cancer Discov. 2024;14(5):711–726. doi: 10.1158/2159-8290.CD-23-1199
- Wallenta-Law J; Bapat B; Sweetnam C, et al. Real-World Impact of Comprehensive Genomic Profiling on Biomarker Detection, Receipt of Therapy, and Clinical Outcomes in Advanced Non–Small Cell Lung Cancer. JCO Precis Oncol. 2024;8:e2400075. doi: 10.1200/PO.24.00075
- Benary M, Wang XD, Schmidt M, et al. Leveraging Large Language Models for Decision Support in Personalized Oncology. JAMA Netw Open. 2023;6(11):e2343689. doi: 10.1001/jamanetworkopen.2023.43689
- Bidard F-C, Mayer EL, Park YH, et al. First-line camizestrant for emerging ESR1-mutated advanced breast cancer. N Engl J Med. 2025;393(6):569-580. doi: 10.1056/NEJMoa2502929
- Van Cutsem E, Köhne CH, Hitre E, et al. Cetuximab and chemotherapy as initial treatment for metastatic colorectal cancer. N Engl J Med. 2009;360(14):1408–1417. doi: 10.1056/NEJMoa0805019
- Kopetz S, Yoshino T, Van Cutsem E, et al. Encorafenib, cetuximab and chemotherapy in BRAF-mutant colorectal cancer: A randomized phase 3 trial. Nat Med. 2025;31(3):901- 908. doi: 10.1038/s41591-024-03443-3
- Fischer A; Pallavajjala A, Jiang L, et al. Artificial intelligence- assisted serial analysis of clinical cancer genomics data identifies changing treatment recommendations and therapeutic targets. Clin Cancer Res. 2022;28(11):2361-2372. doi: 10.1158/1078-0432.CCR-21-4061
- Jin Q, Wang Z, Floudas CS, et al. Matching patients to clinical trials with large language models. Nat Commun. 2024;15:9074. doi: 10.1038/s41467-024-53081-z
- Wornow M, Lozano A, Dash D, et al. Zero-shot clinical trial patient matching with LLMs. NEJM AI. 2025;2(1):Alcs2400360. doi: 10.1056/Alcs2400360
- Li I, Pan J, Goldwasser J, et al. Neural natural language processing for unstructured data in electronic health records: A review. Comput Sci Rev. 2022;46:100511. doi: 10.1016/j.cosrev.2022.100511
- Beattie J, Neufeld S, Yang D, et al. Utilizing large language models for enhanced clinical trial matching: A study on automation in patient screening. Cureus. 2024;16(5):e60044. doi: 10.7759/cureus.60044
- Kurnaz S, Loaiza-Bonilla A, Carvallo Castañeda D, et al. Effect of a novel artificial intelligence (AI)–enabled multi- trial matching system on patient matching using real-world data. J Clin Oncol. 2024;42(16 Suppl):e13501. doi: 10.1200/JCO.2024.42.16_suppl.e13501
- Anuyah S, Singh MK, Nyavor H. Advancing clinical trial outcomes using deep learning and predictive modelling: Bridging precision medicine and patient-centered care. World J Adv Res Rev. 2024;24(3):001-025. doi: 10.30574/wjarr.2024.24.3.3671
- Liu R, Rizzo S, Whipple S, et al. Evaluating eligibility criteria of oncology trials using real-world data and AI. Nature. 2021;592(7855):629–633. doi: 10.1038/s41586-021-03430-5
- Savitz ST, Savitz LA, Fleming NS, et al. How much can we trust electronic health record data? Healthcare. 2020;8(3):100444. doi: 10.1016/j.hjdsi.2020.100444
- Gianfrancesco MA, Tamang S, Yazdany J, Schmajuk G. Potential biases in machine learning algorithms using electronic health record data. JAMA Intern Med. 2018;178(11):1544–1547. doi: 10.1001/jamainternmed.2018.3763
- Borfitz D. AstraZeneca’s pragmatic approach to clinical research. Clinical Research News. 2021. Available from: https://www.clinicalresearchnewsonline.com/news/2021/03/22/astrazeneca-s-pragmatic-approach-to- clinical-research [Last accessed on 2025 Nov 03].
- Kallich JD. OSCER story, Act III. LinkedIn. 2015. Available from: https://www.linkedin.com/pulse/oscer-story-act-iii- joel-kallich/ [Last accessed on 2025 Nov 15].
- Preventing patient dropouts with AI-based outreach: How AI enhances patient retention in clinical trials. 2025. Available from: https://www.bekhealth.com/ blog/preventing-patient-dropouts-with-ai-based-outreach- how-ai-enhances-patient-retention-in-clinical-trials/ [Last accessed on 2026 Jan 05].
- Sambursky V. Clinical trials & patient retention: How projective AI goes beyond the boundaries of predictive AI. 2022. Available from: https://www. endominance.com/blog/2022/07/20/discover-how- projective-ai-maximizes-patient-retention-in-clinical- trials/ [Last accessed on 2026 Jan 05].
- Harrer S, Shah P, Antony B, et al. Artificial intelligence for clinical trial design. Trends Pharmacol Sci. 2019;40(8):577– 591. doi: 10.1016/j.tips.2019.05.005
- The Pivotal Role of AI in Clinical Trials: From Digital Twins to Synthetic Control Arms. Blog Article. 2025. Accessed on November 5ht, 2025. Available from: https://www.biopharmatrend.com/artificial-intelligence/ the-pivotal-role-of-ai-in-clinical-trials-from-digital-twins- to-synthetic-control-arms-176/ [Last accessed on 2025 Nov 05].
- Fisher CK, Smith AM, Walsh JR, et al. Machine learning for comprehensive forecasting of Alzheimer’s Disease progression. Sci Rep. 2019;9:13622. doi: 10.1038/s41598-019-49656-2
- Gatto NM, Campbell UB. Hope is not a strategy: Using robust real-world evidence to make better clinical development decisions. Ther Innov Regul Sci. 2025;59(6):1288-1293. doi: 10.1007/s43441-025-00822-x
- Klabunde T. Digital “Twinning”: Clinical trials powered by AI. Sanofi Magazine. 2024. Available from: https://www. sanofi.com/en/magazine/our-science/digital-twinning- clinical-trials-ai [Last accessed on 2025 Nov 05].
- S. National Science Foundation. Foundations for Digital Twins as Catalyzers of Biomedical Technological Innovation (FDT-BioTech). Posted 2024. Available from: https://www. nsf.gov/funding/opportunities/fdt-biotech-foundations- digital-twins-catalyzers-biomedical [Last accessed on 2025 Nov 07].
- S. National Science Foundation. NSF, NIH and FDA support research in digital twin technology for biomedical applications. Posted August 20, 2025. Available from: https:// www.nsf.gov/news/nsf-nih-fda-support-research-digital- twin-technology [Last accessed on 2025 Nov 07].
- European Medicines Agency, Heads of Medicines Agencies. Multi-annual artificial intelligence workplan 2023–2028: HMA–EMA joint Big Data Steering Group. 2023. Available from: https://www.ema.europa.eu/en/documents/work- programme/multi-annual-artificial-intelligence-workplan-2023-2028-hma-ema-joint-big-data-steering-group_en.pdf [Last accessed on 2025 Nov 15].
- European Medicines Agency. Real-world evidence framework to support EU regulatory decision-making: Report on experience gained with regulator-led studies September 2021–February 2023. 2023. Available from: https://www.ema.europa.eu/en/documents/report/ real-world-evidence-framework-support-eu-regulatory-decision-making-report-experience-gained-regulator- led-studies-september-2021-february-2023_en.pdf [Last accessed on 2025 Nov 03].
- Patel D, Grimson F, Mihaylova E, et al. Use of external comparators for health technology assessment submissions based on single-arm trials. Value Health. 2021;24(8):1118– 1125. doi: 10.1016/j.jval.2021.01.015
- Will synthetic control arms revolutionize clinical trials? 2025. Available from: https://servier.com/en/ newsroom/synthetic-control-arms-revolutionize-clinical- trials/ [Last accessed on 2025 Nov 03].
- Jahanshahi M, Gregg K, Davis G, et al. The use of external controls in FDA regulatory decision making. Ther Innov Regul Sci. 2021;55(5):1019–1035. doi: 10.1007/s43441-021-00302-y
- Wang X, Dormont F, Lorenzato C, et al. Current perspectives for external control arms in oncology clinical trials: Analysis of EMA approvals 2016–2021. J Cancer Policy. 2023;35:100403. doi: 10.1016/j.jcpo.2023.100403
- S. Food and Drug Administration. Considerations for the Design and Conduct of Externally Controlled Trials for Drug and Biological Products. 2023. FDA-2022-D-2983. Available from: https://www.fda.gov/regulatory-information/ search-fda-guidance-documents/considerations-design- and-conduct-externally-controlled-trials-drug-and- biological-products [Last accessed on 2025 Nov 19].
- Waters M. AI meets informed consent: A new era for clinical trial communication. JNCI Cancer Spectr. 2025;9(2):pkaf028. doi: 10.1093/jncics/pkaf028
- CSR Automation: Clinical Study Report Solution. 2024. Available from: https://www.clinion.com/csr- automation/ [Last accessed on 2025 Nov 03].
- 30%–50% Faster Clinical Study Reports with Generative Artificial Intelligence-Powered Automation. 2026. Available from: https://www.axtria.com/white- papers/transforming-clinical-study-reports-with-gen-ai- intelligence-powered-automation [Last accessed on 2025 Nov 19].
- Fast Data Science. Transforming clinical trials with fast clinical AI. Available from: https://clinicaltrialrisk.org/ clinical-trial-protocol-software/transforming-clinical- trials-with-fast-clinical-ai/ [Last accessed on 2025 Nov 03].
- Fast Data Science. AI-powered clinical trial analysis dashboard. Available from: https://clinical.fastdatascience. com/dashboard [Last accessed on 2025 Nov 05].
- AI-Powered Clinical Trial Management & Documentation Solutions. 2026. Available from: https:// cluepoints.com/what-we-do/risk-based-quality- management-rbqm/documentation/ [Last accessed on 2025 Nov 05].
- Lampreia F, Madeira C, Dores H. Digital health technologies and artificial intelligence in cardiovascular clinical trials: A landscape of the European space. Digit Health. 2024;10. doi: 10.1177/20552076241277703
- Desai MK. Artificial intelligence in pharmacovigilance–opportunities and challenges. Perspect Clin Res. 2024;15(3):116–121. doi: 10.4103/picr.picr_290_23
- Painter JL, Kassekert R, Bate A. An industry perspective on the use of machine learning in drug and vaccine safety. Front Drug Saf Regul. 2023;3. doi: 10.3389/fdsfr.2023.1110498
- Goldberg JM, Amin NP, Zachariah KA, et al. The introduction of AI into decentralized clinical trials. JACC Adv. 2024;3(8):101094. doi: 10.1016/j.jacadv.2024.101094
- Yang Y, Krusche P, Pantoja K, et al. Using large language models to generate clinical trial tables and figures. arXiv. Preprint online 2024. doi: 10.48550/arXiv.2409.12046
- Pinnacle 21® Enterprise Software for Clinical Data Standardization. Available from: https://www.certara.com/ pinnacle-21-enterprise-software/ [Last accessed on 2025 Nov 03].
- Ross S, Carmeli I. Optimizing clinical research: Using AI for automated validation of output tables against ADaM. In: Proceedings of the PHUSE US Connect 2024; 5–8 May 2024; Bethesda, MD, USA. Available from: www.lexjansen. com/phuse-us/2024/et/PAP_ET06.pdf [Last accessed on 2025 Nov 19].
- Shukla R, Bahl A. Transforming clinical trials with AI driven protocol optimization and next gen statistical programming. In: Proceedings of the PHUSE US Connect 2025; 16-19 March 2025. Orlando, FL, USA. Available from: https:// www.lexjansen.com/phuse-us/2025/et/PAP_ET15.pdf [Last accessed on 2025 Nov 05].
- Revvity Signals. Clinical Data Like You’ve Never Seen It Before: Why Spotfire is the Leading Tool for Clinical Analytics. 2023. Available from: https://revvitysignals.com/sites/default/files/2023-08/RS_White%20Paper%20_Clinical%20Data%20Like%20You%E2%80%99ve%20Never%20Seen%20It%20Before_v4_08102023_FINAL.pdf [Last accessed on 2025 Nov 15].
- Spotfire Community. Spotfire Copilot™. 2025. Available from: https://community.spotfire.com/articles/spotfire/spotfire- copilot/ [Last accessed on 2026 Jan 03].
- Charman R. Unveiling Spotfire Copilot™ 2.0: Discover the latest transformative features! Spotfire Blog. 2025. Available from: https://www.spotfire.com/blog/2025/03/12/unveiling-spotfire-copilot-2-0-discover-the-latest-transformative- features/ [Last accessed on 2026 Jan 03].
- ISO/IEC 42001:2023. Information technology—Artificial intelligence—Management system. International Organization for Standardization. 2023. Available from: www.iso.org/standard/42001 [Last accessed on 2025 Nov 03].
- European Parliamentary Research Service. The impact of the General Data Protection Regulation (GDPR) on artificial intelligence. 2020. Available from: www.europarl.europa.eu/RegData/etudes/STUD/2020/641530/EPRS_ STU(2020)641530_EN.pdf [Last accessed on 2025 Nov 05].
- Liu X, Rivera SC, Moher D, et al. Reporting guidelines for clinical trial reports for interventions involving artificial intelligence: The CONSORT-AI extension. Lancet Digit Health. 2020;2(10):e537-e548. doi: 10.1016/S2589-7500(20)30218-1
- World Health Organization. Ethics and governance of artificial intelligence for health: WHO guidance. 2021. Available from: https://www.who.int/publications/i/ item/9789240029200 [Last accessed on 2025 Nov 05].
- McKinsey & Company. Unlocking peak operational performance in clinical development with artificial intelligence. 2025. Available from: www.mckinsey.com/ industries/life-sciences/our-insights/unlocking-peak- operational-performance-in-clinical-development-with- artificial-intelligence [Last accessed on 2025 Nov 05].
- Williams, D. The mother of invention: From steam engines to AI-designed drugs. Drug Target Review. 2025. Available from: https://www.drugtargetreview.com/article/190739/ steam-to-ai-drug-innovation/ [Last accessed on 2026 Jan 03].
- Wilczok D, Zhavoronkov A. Progress, Pitfalls, and Impact of AI-Driven Clinical Trials. Clin Pharmacol Ther. 2024;117(4):887–890. doi: 10.1002/cpt.3542
- HL7 International, OHDSI. FHIR to OMOP: HL7 Vulcan Accelerator project. 2025. Available from: https://hl7vulcan. org/projects/fhir-to-omop/ [Last accessed on 2026 Jan 03].
- Jayathissa P, Subbiah S, Seneviratne M, et al. OMOP-on- FHIR: Integrating the Clinical Data Through FHIR Bundle to OMOP CDM. Stud Health Technol Inform. 2025;327:667- 671. doi: 10.3233/shti250432
- AI Structural Biology (AISB) Network. Available from: https://www.apheris.com/join-a-network/aisb [Last accessed on 2025 Nov 03].
- Heyndrickx W, Mervin L, Morawietz T, et al. MELLODDY: Cross-pharma Federated Learning at Unprecedented Scale Unlocks Benefits in QSAR without Compromising Proprietary Information. J Chem Inf Model. 2024;64(7):2331- 2344. doi: 10.1021/acs.jcim.3c00799
- FHIR to CDISC Joint Mapping Implementation Guide, Release 1.0.0—STU 1. HL7 International. 2021. Available from: https://hl7.org/fhir/uv/cdisc-mapping/STU1/ [Last accessed on 2026 Jan 03].
- TransCelerate BioPharma Inc. Digital Data Flow. Available from: https://www.transceleratebiopharmainc.com/ initiatives/digital-data-flow/ [Last accessed on 2026 Jan 03].
- The Research Data Management toolkit for Life Sciences. Available from: https://rdmkit.elixir-europe.org/ [Last accessed on 2026 Jan 03].
- Global Alliance for Genomics and Health. Phenopackets. Available from: https://www.ga4gh.org/product/ phenopackets/ [Last accessed on 2026 Jan 03].
- Global Alliance for Genomics and Health. Workflow Execution Service (WES). Available from: https://www. ga4gh.org/product/workflow-execution-service-wes/ [Last accessed on 2026 Jan 03].
- About Us. BioCompute Object Portal. Available from: https://www.biocomputeobject.org/about/ [Last accessed on 2026 Jan 04].
- Keeney J, King CH, Wang T, et al. Updates to the BioCompute tools and guidelines. Available from: https://www.fda.gov/ media/171316/download [Last accessed on 2026 Jan 04].
- Xu Z, Ren F, Wang P, et al. A generative AI-discovered TNIK inhibitor for idiopathic pulmonary fibrosis: A randomized phase 2a trial. Nat Med. 2025;31(8):2602-2610. doi: 10.1038/s41591-025-03743-2
- Austin D, Biswas K, Pollock K, et al. Interdisciplinary analysis of drugs: Structural features and clinical data. J Clin Transl Sci. 2022;6(1):e43. doi: 10.1017/cts.2022.375
