AccScience Publishing / EJMO / Volume 8 / Issue 1 / DOI: 10.14744/ejmo.2024.23872
RESEARCH ARTICLE

An Investigation on the Genetic Alterations of the ALG3 Gene and Their Possible Correlation with the Development of HNSCC and LUSC

Vipra Sharma1 Anitha Pandi2 Smiline Girija Aseervatham Selvi1 Paramasivam Arumugam2 Vijayashree Priyadharsini Jayaseelan2
Show Less
1 Department of Microbiology, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, India
2 Centre for Cellular and Molecular Research, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, India
Submitted: 14 November 2023 | Accepted: 11 February 2024 | Published: 6 March 2024
© 2024 by the Author(s). This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution -Noncommercial 4.0 International License (CC-by the license) ( https://creativecommons.org/licenses/by-nc/4.0/ )
Abstract

Objectives: The ALG3 gene has been associated with various hallmarks of cancer including proliferation and metastasis. However, the relationship between the genetic alterations in ALG3 with the pathophysiology of HNSCC and LUSC is poorly understood. The present study aimed to demonstrate the genetic alterations in the ALG3 gene and its consequences at the molecular level in head and neck squamous cell carcinoma (HNSCC) and lung squamous cell carcinoma (LUSC).

Methods: The cBIoportal database was employed to identify the genetic alterations. UALCAN was used to demonstrate the gene expression and survival analysis. The microRNAs targeting ALG3 were demonstrated using the miRDB database.

Results: The ALG3 gene exhibited 20% and 51% alteration in HNSCC and LUSC patients respectively. There was a statistically significant increase in the expression of the ALG3 gene in both datasets. The HNSCC patients presenting with high expression of ALG3 were found to exhibit a low survival probability when compared to the low/medium expression group.

Conclusion: The gene amplification of ALG3 correlated well with the gene expression status and survival of patients in the HNSCC dataset. This provides evidence of the possible involvement of the ALG3 gene with HNSCC, however, experimental evidence is warranted to prove this association.

Keywords
Genetic variation
mutation
gene expression
prognosis
survival
carcinoma 
Conflict of interest
None declared.
References

1. Schjoldager KT, Narimatsu Y, Joshi HJ, Clausen H. Global view of human protein glycosylation pathways and functions. Nat Rev Mol Cell Biol 2020;21:729–49.
2. Cui X, Pei X, Wang H, Feng P, Qin H, Liu S, et al. ALG3 promotes peritoneal metastasis of ovarian cancer through increasing interaction of α1,3-mannosylated uPAR and ADAM8. Cells 2022;11:3141.
3. Pinho SS, Reis CA. Glycosylation in cancer: Mechanisms and clinical implications. Nat Rev Cancer 2015;15:540–55. 
4. Shi ZZ, Jiang YY, Hao JJ, Zhang Y, Zhang TT, Shang L, et al. Identification of putative target genes for amplification within 11q13.2 and 3q27.1 in oesophagal squamous cell carcinoma. Clin Transl Oncol 2014;16:606–15.
5. Choi YW, Bae SM, Kim YW, Lee HN, Kim YW, Park TC, et al. Gene expression profiles in squamous cell cervical carcinoma using array-based comparative genomic hybridization analysis. Int J Gynecol Cancer 2007;17:687–96.
6. Zhao Z, Zheng Z, Huang J, Wang J, Peng T, Lin Y, et al. Expression of ALG3 in hepatocellular carcinoma and its clinical implication. Front Mol Biosci 2022;9:816102.
7. Yuan Y, Xie B, Guo D, Liu C, Jiang G, Lai G, et al. Identification of ALG3 as a potential prognostic biomarker in lung adenocarcinoma. Heliyon 2023;9:e18065.8. Aditya J, Smiline Girija AS, Paramasivam A, Vijayashree Priyadharsini J. Genetic alterations in Wnt family of genes and their putative association with head and neck squamous cell carcinoma. Genomics Inform 2021;19:e5.
9. Devi SK, Paramasivam A, Girija ASS, Priyadharsini JV. Decoding the genetic alterations in cytochrome P450 family 3 genes and its association with HNSCC. Gulf J Oncol 2021;1:36–41.
10. Jayaseelan VP, Ramesh A, Arumugam P. Breast cancer and DDT: putative interactions, associated gene alterations, and molecular pathways. Environ Sci Pollut Res Int 2021;28:27162–73.
11. Cerami E, Gao J, Dogrusoz U, Gross BE, Sumer SO, Aksoy BA, et al. The cBio cancer genomics portal: An open platform for exploring multidimensional cancer genomics data. Cancer Discov 2012;2:401–4. 
12. Gao J, Aksoy BA, Dogrusoz U, Dresdner G, Gross B, Sumer SO, et al. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci Signal 2013;6:pl1.
13. Chandrashekar DS, Karthikeyan SK, Korla PK, Patel H, Shovon AR, Athar M, et al. UALCAN: An integrated cancer data analysis platform update. Neoplasia 2022;25:18–27.
14. Chen Y, Wang X. miRDB: An online database for prediction of functional microRNA targets. Nucleic Acids Res 2020;48:D127– D31.
15. Liu W, Wang X. Prediction of functional microRNA targets by integrative modelling of microRNA binding and target expression data. Genome Biol 2019;20:18. 
16. Szklarczyk D, Gable AL, Lyon D, Junge A, Wyder S, HuertaCepas J, et al. STRING v11: Protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res 2019;47:D607–D13.
17. Sung H, Ferlay J, Siegel RL, Laversanne M, Soerjomataram I, Jemal A, et al. Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin 2021;71:209–49.
18. Müller M, Li J, Giger R, Elicin O. Head and neck cancer with synchronous nodules of the lung as a diagnostic and therapeutic challenge - a systematic review. Oral Oncol 2023;145:106529.
19. Shao P, Wei C, Wang Y. ALG3 contributes to the malignant properties of OSCC cells by regulating the CDK-Cyclin pathway. Oral Dis 2021;27:1426–34. 
20. Sun X, He Z, Guo L, Wang C, Lin C, Ye L, et al. ALG3 contributes to stemness and radioresistance through regulating glycosylation of TGF-β receptor II in breast cancer. J Exp Clin Cancer Res 2021;40:149.
21. Wu H, Zhao X, Zhu T, Rong D, Wang Y, Leng D, et al. A glycosyltransferase-related signature for predicting overall survival in head and neck squamous cell carcinoma. Front Genet 2022;13:856671.
22. Yang Q, Xu B, Sun H, Wang X, Zhang J, Yu X, et al. A genomewide association scan of biological processes involved in oral lichen planus and oral squamous cell carcinoma. Medicine Baltimore 2017;96:e7012.
23. Ke SB, Qiu H, Chen JM, Shi W, Han C, Gong Y, et al. ALG3 contributes to the malignancy of non-small cell lung cancer and is negatively regulated by MiR-98-5p. Pathol Res Pract 2020;216:152761.

Share
Back to top
Eurasian Journal of Medicine and Oncology, Electronic ISSN: 2587-196X Print ISSN: 2587-2400, Published by AccScience Publishing