AccScience Publishing / EJMO / Online First / DOI: 10.36922/EJMO026120133
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SHORT COMMUNICATION

Сirculating DNA markers for assessing antitumor therapy efficacy and monitoring metastatic colorectal cancer

Anastasia Ponomaryova1* Dmitry Kostromitsky1 Anna Tarasova1 Elena Rykova2,3 Alexey Dobrodeev1 Ulyana Zhilenkova4 Sergey Afanasiev1 Nadezhda Cherdyntseva1,4
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1 Laboratory of Molecular Oncology and Immunology, Cancer Research Institute, Tomsk National Research Medical Center of the Russian Academy of Sciences, Tomsk, Russia
2 Laboratory of Regulation of Gene Expression, Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
3 Department of Engineering Problems of Ecology, Novosibirsk State Technical University, Novosibirsk, Russia
4 Faculty of Chemistry, National Research Tomsk State University, Tomsk, Russia
Received: 18 March 2026 | Revised: 3 June 2026 | Accepted: 4 June 2026 | Published online: 26 August 2026
© 2026 by the Author(s). This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution -Noncommercial 4.0 International License (CC-by the license) ( https://creativecommons.org/licenses/by-nc/4.0/ )
Abstract

Introduction: Colorectal cancer remains one of the leading causes of oncological morbidity and mortality. Aberrant methylation patterns of tumor-suppressor genes and oncogenes have been detected in circulating DNA isolated from the blood of cancer patients, suggesting their potential utility as diagnostic and prognostic markers.

Objective: To evaluate changes in the methylation levels of VIM, SEPTIN9, and DCC genes in cell-surface-bound cell-free DNA (csb-cfDNA) from the blood of metastatic colorectal cancer (mCRC) patients after antitumor treatment over a long-term follow-up period.

Methods: Blood samples were collected from mCRC patients (n = 21) at baseline, after three courses of preoperative chemotherapy (FOLFOXIRI regimen), 10–15 days post-surgery, and every three months during follow-up. The methylation levels of VIM, SEPTIN9, and DCC genes were quantified by methylation-specific polymerase chain reaction.

Results: Preoperative chemotherapy and tumor resection were each associated with a significant decrease in SEPTIN9 and VIM methylation levels in csb-cfDNA compared to baseline (2.3-fold and 2.0-fold, respectively; p ≤ 0.05). DCC methylation decreased 1.5-fold after surgery relative to pre-treatment levels (p ≤ 0.05). During follow-up after completion of combined treatment, methylation levels of SEPTIN9, VIM, and DCC remained stable in mCRC patients without signs of disease progression (n = 8), showing no significant change from post-surgical values (days 10–15). In contrast, mCRC patients with disease progression (n = 13) exhibited increased methylation levels of SEPTIN9, VIM and DCC compared to post-resection values.

Conclusion: These findings indicate that monitoring VIM, DCC, and SEPTIN9 methylation levels in csb-cfDNA has potential for evaluating the effectiveness of antitumor therapy and for early detection of relapses in mCRC patients during the follow-up period.

Keywords
Metastatic colorectal cancer
Relapse diagnostics
Monitoring
Methylation
Circulating DNA
Funding
The study was funded by the state budget project FWNR-2026-0025, Elena Rykova.
Conflict of interest
The authors declare that they have no competing interests.
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Eurasian Journal of Medicine and Oncology, Electronic ISSN: 2587-196X Print ISSN: 2587-2400, Published by AccScience Publishing